PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu025302.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 206aa MW: 23014.5 Da PI: 8.6174 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58 | 1.2e-18 | 5 | 50 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + +sn vtfskRr g++KKA+EL++L +ae+a+i+fs+ k++ + Oeu025302.1 5 SKESNLLVTFSKRRSGLFKKASELCTLYGAEIAIIVFSPGKKVFSF 50 6678999********************************9999887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence |
MTKMSKESNL LVTFSKRRSG LFKKASELCT LYGAEIAIIV FSPGKKVFSF GHPCVESIVD 60 RYMMRNSTPS SSTMQIMEAH RNASVRELNM QLTNILSQWE SEKKCGEELT RIRKVSQGTC 120 WWEVPFNELR LEELEQLKGA MEELKKNVAN QVERLIVEAS NSLQPLLRAS SSGGNVGVDV 180 DVKIPGLGLS MTPHGYSFGY GHPYF* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-55 | M-type_MADS family protein |