PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu023403.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family M-type_MADS
Protein Properties Length: 322aa    MW: 37306.8 Da    PI: 8.5434
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu023403.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.97e-151152344
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 i+ +  r++tf kR++g++ K +E  +LCd++++vii+ +++
  Oeu023403.1 11 ISKEKSRNITFKKRKEGLMRKMHEFTTLCDVNACVIIYPPKQ 52
                 888999********************************8876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MGRAKLNMEL ISKEKSRNIT FKKRKEGLMR KMHEFTTLCD VNACVIIYPP KQDKNTEEPE  60
VWPQNLEEIR RIIDIYKNKN KDSGNKTYGL SDFFIERKRK IKDELEKLRK KNMEAKYPTR  120
INMMDVLSET QLREFYALLS NKAEYVKSRI EMLKRNDNGF NMNTMDLGHG RLIQRGIELE  180
VINQQQAISS MKPVEMHVPI HYPSIDHHQE MHSMMLLMND NDRVQFGGAS SGSNIQCASF  240
QRQVFYESTA AAGHGVVDNV MCHNPVALAR YYAVAPPVLP PVPPTYLQHA VAPPLNSLKE  300
SDEQDDVFQY QIKNEMVRYY E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198111KRKIKDELEKLRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-22M-type_MADS family protein