PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu023243.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 285aa MW: 32866.5 Da PI: 4.1383 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.8 | 3.2e-19 | 10 | 57 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+nk qvtfskRr+g++KKA E S LC+a++ ++i s+ +k++++ Oeu023243.1 10 KIDNKNSLQVTFSKRRTGLFKKAAETSLLCGANIVILIQSPGNKFFTF 57 69*********************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence |
MGRRKIEIRK IDNKNSLQVT FSKRRTGLFK KAAETSLLCG ANIVILIQSP GNKFFTFGEP 60 SVESILNRYQ FLDDSFSTES NPTAHNLLVE ERSENNGATR GFWWQKEKLE TMELQELEAF 120 EEKLNPLLQA GEMNRCQFLD DSFSTESNLT AHDPLVEERI ENDEATREFW WQKENLETMD 180 LQELEAFEEK LNPLLQAGEM NRCQFLDDSF STESDLTSHN LLVEERSEND EATREFGWEN 240 ENMEIVDLQE LEAFEEELKT LLQAGEMNKQ IASASCSMIP LPQQ* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-23 | M-type_MADS family protein |