PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu018117.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

MIKC_MADS

Protein Properties

Length: 172aa MW: 20355.5 Da PI: 10.3819

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu018117.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.9	1.5e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrng++KKA+EL vLCda+v++i++sst+k++ey+s Oeu018117.1 9 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKVSIIMISSTQKIHEYIS 59 79***********************************************86 PP
2	K-box	89.7	5.5e-30	71	165	1	95
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yq++ g++l+ +++e++q++l+kLk+ ++nL+re+R+++Ge+L++L++ ++ +L +++++sl+kiR++K++++ +qie+++kk ++++e+++++ Oeu018117.1 71 YQNAVGVDLWITHYEKMQEHLRKLKDINKNLRREIRQRMGESLNDLNYDQIVNLIEDVDDSLRKIRERKYKVIGNQIETSKKKLRNVEEIHRNIL 165 7899999************************************************************************************9875 PP

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKVSIIMISS TQKIHEYISP 60 TSTTKQLFDQ YQNAVGVDLW ITHYEKMQEH LRKLKDINKN LRREIRQRMG ESLNDLNYDQ 120 IVNLIEDVDD SLRKIRERKY KVIGNQIETS KKKLRNVEEI HRNILLEFVS T*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	3e-72	MIKC_MADS family protein