PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu017584.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24345.2 Da PI: 10.0689 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.9 | 1.8e-20 | 17 | 62 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + +sn vtfskRr g++KKA+EL++LC ae+a+i+fs+ k++ + Oeu017584.1 17 SKESNLLVTFSKRRSGLFKKASELCTLCSAEIAIIVFSPGKKVFSF 62 6678999********************************9999887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence |
MTRKSRGRQK IKMTKMSKES NLLVTFSKRR SGLFKKASEL CTLCSAEIAI IVFSPGKKVF 60 SFGHPCVESI VDRYMMRNST PSSSTMQLLE AHRNASVREL NMQLTNILSQ LESEKKCGEE 120 LTRIRKASQG TCWWEAPFNE LRLEELEQLK GAMEELKKNV ANQVERLIVE ASNSLQPVLG 180 ASSSRGNVGV DVDVKIPALG FSMTPHGYSF GYGRPFF* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-67 | M-type_MADS family protein |