PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu017226.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 21802.8 Da PI: 4.9846 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.7 | 1.7e-42 | 50 | 149 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll++lpe +r+dam+s+vy A+ar+rdPvyG++g i +lq+q+++l+aela+ + Oeu017226.1 50 PCAACKILRRRCVDKCVLAPYFPPSEPLKFTIAHRVFGASNIIKLLQELPEAQRSDAMNSMVYDANARLRDPVYGCAGAICQLQKQISELQAELAKSQ 147 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Oeu017226.1 148 AE 149 87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence |
MDCRENPSII TTGATAAAVA AATSPSSLSP ISSPTGSFSS FQPRPVSFSP CAACKILRRR 60 CVDKCVLAPY FPPSEPLKFT IAHRVFGASN IIKLLQELPE AQRSDAMNSM VYDANARLRD 120 PVYGCAGAIC QLQKQISELQ AELAKSQAEI LNMQYQNANL VESIYQKMLQ NQENSPQYQQ 180 DEDSRFFLDE SFLGLEPL* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-68 | LBD family protein |