PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu016647.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

M-type_MADS

Protein Properties

Length: 409aa MW: 43528.7 Da PI: 5.9143

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu016647.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.8	2.5e-22	4	50	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 en+ n qvtfskRr+g++KKA+EL++LCd+e+ vi+fs+++k + + Oeu016647.1 4 MENDNNLQVTFSKRRAGLFKKASELCTLCDVEIGVIVFSPSDKAFSF 50 79**************************************9987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MAKMENDNNL QVTFSKRRAG LFKKASELCT LCDVEIGVIV FSPSDKAFSF GHPNINAICD 60 RFLSQNNAPQ LPDPVTQMVE AHRTSNIIQR NQDLTNVDST IESLKRSIKE KEEMKLVGIA 120 QQWFPPSIDN LDFHQLQDLL ARYAHFKNIV DFEVQRASNP GNQYFPTSAG TNPNFPVHEG 180 EDLGFPGLVT SGFAAPNYRT TVPVAVHGST VPAASFGVDG VNTFATGVFT TPTHYVASGS 240 NEMVLDVSSN PSNYLVPAGV SGVSNLIATA APYVPMGMGS IFPTYGMASS SRATAPVFDQ 300 RNPSPGEGSS RVMALPVFDP RNPSLGEGSS RVTALPLFDP RNPSLGEGSS SVMALRVFDP 360 RNPSPGREGS TRATALPLFD PRNPSTGEGN GASGSNADAP PAYGSRAM*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MAKMENDNNL QVTFSKRRAG LFKKASELCT LCDVEIGVIV FSPSDKAFSF GHPNINAICD  60
RFLSQNNAPQ LPDPVTQMVE AHRTSNIIQR NQDLTNVDST IESLKRSIKE KEEMKLVGIA  120
QQWFPPSIDN LDFHQLQDLL ARYAHFKNIV DFEVQRASNP GNQYFPTSAG TNPNFPVHEG  180
EDLGFPGLVT SGFAAPNYRT TVPVAVHGST VPAASFGVDG VNTFATGVFT TPTHYVASGS  240
NEMVLDVSSN PSNYLVPAGV SGVSNLIATA APYVPMGMGS IFPTYGMASS SRATAPVFDQ  300
RNPSPGEGSS RVMALPVFDP RNPSLGEGSS RVTALPLFDP RNPSLGEGSS SVMALRVFDP  360
RNPSPGREGS TRATALPLFD PRNPSTGEGN GASGSNADAP PAYGSRAM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	107	ESLKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-36	M-type_MADS family protein