PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu016005.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C2H2

Protein Properties

Length: 452aa MW: 49894.2 Da PI: 9.0067

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu016005.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	55	75	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H Oeu016005.1 55 CEICGKGFQRDQNLQLHRRGH 75 *******************88 PP
2	zf-C2H2	13.6	0.00021	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Oeu016005.1 129 WKCEKCSKRYAVQSDWKAHSKTC 151 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MIDKLISIGS TDPVSGSNPQ PAVKKKRSLP GTPDPEAEVI ALSPKTLMAT NRFLCEICGK 60 GFQRDQNLQL HRRGHNLPWK LKQRSSKEVR KRVYVCPEKG CVHHHPSRAL GDLTGIKKHF 120 CRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTREYKCDC GTIFSRRDSF ITHRAFCDVL 180 TEETERVKAA SQMENHAGHI NYQFSLGPNM GQHFSSIFKP TSSNPQNVNY PMTRGISLWN 240 MSQQPLQSQE TLYKNLQEMH QMGISVSSGG AIYSCSDPLV NPCSSNPPAP SSSYQLNWDF 300 AKNLNPSNAA DNQLNCNSLP LSNINVKDVG NHQLAGSVPS LFSTQQQSHQ QSSVANTSAT 360 ALLQKAAQIG ATTTDPSLIG NFGLNCTKNQ VQNAVTTGLG SDFSALNQLQ MYPSMSHHMQ 420 NQENFTEGET RDFLGVGIQS ICHPSSINGW I*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MIDKLISIGS TDPVSGSNPQ PAVKKKRSLP GTPDPEAEVI ALSPKTLMAT NRFLCEICGK  60
GFQRDQNLQL HRRGHNLPWK LKQRSSKEVR KRVYVCPEKG CVHHHPSRAL GDLTGIKKHF  120
CRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTREYKCDC GTIFSRRDSF ITHRAFCDVL  180
TEETERVKAA SQMENHAGHI NYQFSLGPNM GQHFSSIFKP TSSNPQNVNY PMTRGISLWN  240
MSQQPLQSQE TLYKNLQEMH QMGISVSSGG AIYSCSDPLV NPCSSNPPAP SSSYQLNWDF  300
AKNLNPSNAA DNQLNCNSLP LSNINVKDVG NHQLAGSVPS LFSTQQQSHQ QSSVANTSAT  360
ALLQKAAQIG ATTTDPSLIG NFGLNCTKNQ VQNAVTTGLG SDFSALNQLQ MYPSMSHHMQ  420
NQENFTEGET RDFLGVGIQS ICHPSSINGW I*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-118	C2H2 family protein