PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu011889.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | LBD | ||||||||
Protein Properties | Length: 254aa MW: 28865.2 Da PI: 6.2198 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.8 | 2.4e-40 | 20 | 117 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rrkCa+dC+lapyfp+e++++f n+hklFG+sn++k++++l+++ ++dam+++++++++ra+dPv G++++i++l++q++ +kael+ + Oeu011889.1 20 ACAACKYQRRKCAPDCILAPYFPHERHRQFLNAHKLFGVSNIIKIIRHLDQQSKDDAMRTIIFQSDVRASDPVGGCYRIIRSLERQINVAKAELEIIL 117 7********************************************************************************************99765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence |
MTNNNNHTIQ HSRSHATAQA CAACKYQRRK CAPDCILAPY FPHERHRQFL NAHKLFGVSN 60 IIKIIRHLDQ QSKDDAMRTI IFQSDVRASD PVGGCYRIIR SLERQINVAK AELEIILHHL 120 ALCRAQAVVA QQQAALQAVD DTDSTLNCDV INGDPLGSYD ESMNNYHHNL HVQPPQQHRH 180 DQYIDQEQIA LQEINAWGIN AQESTSSSFP IHRRAVVDEC DDFRPILDLP DEREEFKFDP 240 ADENGEPRFV TLA* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 6e-55 | LBD family protein |