PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu011584.2

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 584aa MW: 65706.5 Da PI: 7.5044

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu011584.2	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.1	2.2e-11	27	49	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f+++tG Ck+G+ CkF+H+ Oeu011584.2 27 EDCSFYMKTGSCKFGSGCKFNHP 49 89********************8 PP
2	zf-CCCH	35.1	2.2e-11	186	208	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f+++tG Ck+G+ CkF+H+ Oeu011584.2 186 EDCSFYMKTGSCKFGSGCKFNHP 208 89********************8 PP
3	zf-CCCH	26.2	1.4e-08	283	304	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++++ +G CkyG Ck+ Hg Oeu011584.2 283 ECKYYLTSGGCKYGKACKYYHG 304 7********************9 PP
4	zf-CCCH	37.2	5e-12	327	351	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++r+G CkyG++C+F+H++ Oeu011584.2 327 EKECTYYMRNGSCKYGSNCRFHHPE 351 689********************96 PP
5	zf-CCCH	30.3	7e-10	489	515	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff++tG Cky ++CkF+H++ Oeu011584.2 489 PGEPECSFFLKTGDCKYKSNCKFHHPK 515 5799*********************96 PP
6	zf-CCCH	30	8.6e-10	541	562	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++++r+G+CkyG+ CkF H+ Oeu011584.2 541 ICSHYSRFGICKYGPGCKFDHP 562 8********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MEESVKGGMN IDYNSRKPQY PLRPDAEDCS FYMKTGSCKF GSGCKFNHPS RRKHQDVKER 60 ENQREGNPER AGQIECKAEI EAAWEEGPGL NDDYKEGNEV RTAENENVDG AKGVEYEVNE 120 NQNKEKDGQD VQNWEDEDRN GGYDENESSG EEYEGEGKSM EESVKGGMNI DYNSRKPQYP 180 LRPDAEDCSF YMKTGSCKFG SGCKFNHPSR RKHQVVHQFM DLILCVTSGG CKYGKACKYY 240 HGTGRSPITP ILKLNFLGLP IRTDVKEREN QREGNPERAG QIECKYYLTS GGCKYGKACK 300 YYHGTGRSPI TPILKLNFLG LPIRTGEKEC TYYMRNGSCK YGSNCRFHHP EPTAEPGGNP 360 PPGYSNGGSL PPQGFFSSST SSWSPPKALN ETASVAPLML PATQVIPSPN PEWNGYEDLR 420 RTCLRIQRYT LLLLSSVPFI FGLIEAANYP SSERSLPTPP AFSMSLPTNM NFPFHHQQEM 480 VIEEYPERPG EPECSFFLKT GDCKYKSNCK FHHPKKRYSK PMANPCTLND KGLPLRPDQL 540 ICSHYSRFGI CKYGPGCKFD HPAKFAISQP PPYDRPPFNS QNS*

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MEESVKGGMN IDYNSRKPQY PLRPDAEDCS FYMKTGSCKF GSGCKFNHPS RRKHQDVKER  60
ENQREGNPER AGQIECKAEI EAAWEEGPGL NDDYKEGNEV RTAENENVDG AKGVEYEVNE  120
NQNKEKDGQD VQNWEDEDRN GGYDENESSG EEYEGEGKSM EESVKGGMNI DYNSRKPQYP  180
LRPDAEDCSF YMKTGSCKFG SGCKFNHPSR RKHQVVHQFM DLILCVTSGG CKYGKACKYY  240
HGTGRSPITP ILKLNFLGLP IRTDVKEREN QREGNPERAG QIECKYYLTS GGCKYGKACK  300
YYHGTGRSPI TPILKLNFLG LPIRTGEKEC TYYMRNGSCK YGSNCRFHHP EPTAEPGGNP  360
PPGYSNGGSL PPQGFFSSST SSWSPPKALN ETASVAPLML PATQVIPSPN PEWNGYEDLR  420
RTCLRIQRYT LLLLSSVPFI FGLIEAANYP SSERSLPTPP AFSMSLPTNM NFPFHHQQEM  480
VIEEYPERPG EPECSFFLKT GDCKYKSNCK FHHPKKRYSK PMANPCTLND KGLPLRPDQL  540
ICSHYSRFGI CKYGPGCKFD HPAKFAISQP PPYDRPPFNS QNS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	3e-83	C3H family protein