PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu010794.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 731aa MW: 79012.5 Da PI: 6.5068

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu010794.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	308	328	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Oeu010794.1 308 PCPDFRK-GACRRGDMCEYAHG 328 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 731 aa Download sequence
MCSGPDQSNT SSTTQSAMAT KSNNMDTSNL SVETEDSFHS LLEFAANNDV EAFKRSIELN 60 LSAVDEVGIW YIRKKGSKQI TPEDRTPLMV AATYGSIDVL KLMVALPEVD LNRICGRDKC 120 TALHCAASGG SVLSFDAIKL LLSAGADPNI EDANGHRPVD VIVVPPKLLG VKAALEELLM 180 NNISDGSLGE YNLRVSICNS TASSPVLSSS PESMSPGSPS DSASSPMASK LNDVPAKSTT 240 EKKQYPVDPS LPDIKNSIFS TDEFRMFSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR 300 KYHYSCVPCP DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC ARQVCFFAHT 360 PEELRPLYVS TGSGVPSPRS AATAASVMDM AAALSLLPGS PSSHTVVSPA YKQPMSPTAN 420 GMSHSSAAWP QQNVPTLHLP ASNIQSSRLR SSLSARDILP EDLNVLQDFN AQQHVLNDLA 480 CFSQPRPNSG ALNRSARSNT LTPSNLEELF SAEISSSPRY SDQAVASGAF SPKHKSAVLN 540 QFQQQQNMLS PINTNIFSPR NVEHSLLQAS FGVSSPRMSS PRSVEPSSPM SANFSTFAQR 600 EKQQQLRVLS SRDLGSNRAS VVGSPVNSWT TNWGGAPNGK VDWSVNGGDL AHMKRSTSVE 660 PNNEGEEPDL SWVQSLVKES PPEMMEKFAA PISGAAPSGE GSKSSSQIDS IDQSVLGAWL 720 EQMQLDQLRV *

Sequence ? help Back to Top

Protein Sequence Length: 731 aa Download sequence

MCSGPDQSNT SSTTQSAMAT KSNNMDTSNL SVETEDSFHS LLEFAANNDV EAFKRSIELN  60
LSAVDEVGIW YIRKKGSKQI TPEDRTPLMV AATYGSIDVL KLMVALPEVD LNRICGRDKC  120
TALHCAASGG SVLSFDAIKL LLSAGADPNI EDANGHRPVD VIVVPPKLLG VKAALEELLM  180
NNISDGSLGE YNLRVSICNS TASSPVLSSS PESMSPGSPS DSASSPMASK LNDVPAKSTT  240
EKKQYPVDPS LPDIKNSIFS TDEFRMFSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR  300
KYHYSCVPCP DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC ARQVCFFAHT  360
PEELRPLYVS TGSGVPSPRS AATAASVMDM AAALSLLPGS PSSHTVVSPA YKQPMSPTAN  420
GMSHSSAAWP QQNVPTLHLP ASNIQSSRLR SSLSARDILP EDLNVLQDFN AQQHVLNDLA  480
CFSQPRPNSG ALNRSARSNT LTPSNLEELF SAEISSSPRY SDQAVASGAF SPKHKSAVLN  540
QFQQQQNMLS PINTNIFSPR NVEHSLLQAS FGVSSPRMSS PRSVEPSSPM SANFSTFAQR  600
EKQQQLRVLS SRDLGSNRAS VVGSPVNSWT TNWGGAPNGK VDWSVNGGDL AHMKRSTSVE  660
PNNEGEEPDL SWVQSLVKES PPEMMEKFAA PISGAAPSGE GSKSSSQIDS IDQSVLGAWL  720
EQMQLDQLRV *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein