PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu010457.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 107aa MW: 11979.1 Da PI: 11.0217 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.6 | 3.7e-14 | 14 | 51 | 1 | 38 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 k+i+ snrqvtfskRr ++KK + ++vL+++eva++ Oeu010457.1 14 KKIKKLSNRQVTFSKRRVSLFKKESKICVLTGTEVAIV 51 679999******************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence |
MEKKTQSRRK IEMKKIKKLS NRQVTFSKRR VSLFKKESKI CVLTGTEVAI VKICVLTGTE 60 VAIVVQSLTG KRVFTFGHSS VNSIIARIKN EITYDGSAKN YNKTPD* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-21 | M-type_MADS family protein |