PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu009929.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family M-type_MADS
Protein Properties Length: 129aa    MW: 14868.6 Da    PI: 10.6248
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu009929.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.14.6e-181050242
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 +i+n+  r+ tf kR++g++KK +ELS+LC+++++ ii+s+
  Oeu009929.1 10 FISNDCARKATFKKRKKGLIKKVSELSTLCGIDICAIIYSP 50
                 8***************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    
MTRKKVKLAF ISNDCARKAT FKKRKKGLIK KVSELSTLCG IDICAIIYSP YESQPDVLLD  60
NHGVHRVLAQ FKRMPEMERS KKMVNQESFI RQRIAKASDQ LKKQHKENRE KEITQVMYQC  120
LTGKGLQI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFISNDCARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-51M-type_MADS family protein