PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu007933.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C2H2

Protein Properties

Length: 408aa MW: 45995.2 Da PI: 9.0441

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu007933.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.7	4.7e-06	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Oeu007933.1 53 YVCEICNQGFQRDQNLQMHRRRH 75 9*********************9 PP
2	zf-C2H2	16.2	3e-05	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ Oeu007933.1 130 WVCEKCSKGYAVQSDYKAHLKTC 152 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MISNYLSSSS SHPSFSAENG NISKRKRRPP GTPDPDAEVV SLSPKTLLES DRYVCEICNQ 60 GFQRDQNLQM HRRRHKVPWK LQKRETPIVR KRVFVCPEPT CLHHDPCHAL GDLVGIKKHF 120 RRKHSNHKQW VCEKCSKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES FIEHQDSCSM 180 GQLRADSHAL QSTAYLTRTA SGPSPSSDSN LSNVAPWPIF MTNVCESRNS KPAFLELQLL 240 TKPHVNGEEQ SMHLQLSIGS SGICEKNEMD NANISRFSPR KSGTSEKVSR VKEQEQELLR 300 LVLAEKAYAE EARIQAKRQS ELAEHEFACA KRIRQQARAE LEKAQALKEH AIMKINSTIL 360 QLTCHSCKQK FQKGITEAST PFENAFGLSY ISSALRETAD RLTFCEL*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MISNYLSSSS SHPSFSAENG NISKRKRRPP GTPDPDAEVV SLSPKTLLES DRYVCEICNQ  60
GFQRDQNLQM HRRRHKVPWK LQKRETPIVR KRVFVCPEPT CLHHDPCHAL GDLVGIKKHF  120
RRKHSNHKQW VCEKCSKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES FIEHQDSCSM  180
GQLRADSHAL QSTAYLTRTA SGPSPSSDSN LSNVAPWPIF MTNVCESRNS KPAFLELQLL  240
TKPHVNGEEQ SMHLQLSIGS SGICEKNEMD NANISRFSPR KSGTSEKVSR VKEQEQELLR  300
LVLAEKAYAE EARIQAKRQS ELAEHEFACA KRIRQQARAE LEKAQALKEH AIMKINSTIL  360
QLTCHSCKQK FQKGITEAST PFENAFGLSY ISSALRETAD RLTFCEL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	29	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-142	C2H2 family protein