PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu006941.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 319aa MW: 36117.1 Da PI: 8.6169

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu006941.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.5	1.2e-09	86	110	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt++C f++ GtCk G+ C++aHg Oeu006941.1 86 YKTRICAKFSE-GTCKNGEHCTYAHG 110 9********.***********9 PP
2	zf-CCCH	19.5	1.7e-06	145	167	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t++C f+ + +C+yG +CkF H Oeu006941.1 145 TKICYLFYNGLECRYGKKCKFLH 167 899****88********** PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MSFPDPAQQP PLPPFLPLPF AGGDVDRFWP TPPMNGAVSQ FEHPPPFKRP MSLENNPSSF 60 APFAQMKSHD DISKSSETKG TGHIFYKTRI CAKFSEGTCK NGEHCTYAHG VEDLRNPPPN 120 WQELVRGKKR GTENFSDDQR MTHRTKICYL FYNGLECRYG KKCKFLHERP MKFLTDISKQ 180 KRESVVVSIG TTRPDLINKS DYAQPDYAFR KMKLGCKWEI GQCPSGETCH FAHDKSDFQL 240 HRARVKTEPV MNSGSKIPEE PFLVPVIGSS QATAVIVAPA NEDAERKKWK LGRQVKGIYA 300 DWLDDFLPPN YSTSNEEI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	6e-47	C3H family protein