PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu006936.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family C3H
Protein Properties Length: 317aa    MW: 35784.6 Da    PI: 9.3111
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu006936.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.44e-0694110926
                  GGGTS--TTTTT-SS-SS CS
      zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                  f++ GtCk G+ C++aHg
  Oeu006936.1  94 FSK-GTCKNGEHCTYAHG 110
                  889.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MSFPDPAQQP PLPPFLPLPF AGGDVDRFWP TPPMNGAVSQ FEHPPPFKRL MNLENNPSNF  60
APFAQMKSHD DITKSSETKG TGHIFYKTHI YAKFSKGTCK NGEHCTYAHG VEDLRNPPPN  120
WQELVRGKKR GTENFSDDQR MTHRTKICYL FYNGFECRYG EKYKFLHESP MKFLTDISKQ  180
KRESVVVSIG TTRPDLINKS DYAQPDYGKN LSSSSDTFQA KTPFRKTKLG CKWEIGQCPS  240
GKTCHFAHDQ SDFQLHRARV KTEPVMNSGS KIPEEPFLVP VIGSSQATAV IVAPANEDAE  300
RKTWKLGRQV PNTLLQ*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-41C3H family protein