PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu006562.2

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 699aa MW: 76208.4 Da PI: 6.695

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu006562.2	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	5.8e-07	284	304	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg Oeu006562.2 284 PCPEFRK-GVCRRGDMCEYAHG 304 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence
MDTRKLTVET EDSFSSLLEF AANNDVVGFK RSIEYDSSGI DEAALWYVRK KGSKLIVHEE 60 RTPLMVAATY GSVDVLNLLV AQCEVDLNRS CGPDKCTALH CAASGGSINV LDVLKLLISA 120 GADPNIENSD GERPVDVIVC HPKLLGARAA LQELLMNICS GGLVNDYNSR VSVSTSNASS 180 PLLSSSPDCR STCSPSDSVS SPVASKFNDV PSNFTSEKKE YPVDPSLPDI KNSIYSTDEF 240 RMFSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPEFRK GVCRRGDMCE 300 YAHGVFECWL HPAQYRTRLC KDGTSCERRV CFFAHTPEEL RPLYVSTGSA VPSPRSAASA 360 ASVMDMAAAL SFLPGSPLSH SVISPAFNQP ISPTANGMLH SAGAWPQQNV PTLHLPGSNL 420 QSSRLRSSLS ARDIPPVDLN MLQDFDAQQL VGNDLTRFSQ SRSASLNRSG WSKALSPSNL 480 DNLFSAEVTL SPRYSDQAVA SGIFSPRHKS AALNQFQQHS ILPPMTPKVF SPKNGEHPLF 540 QGSFGISSPR ISPRSVEPIS PRNARFSAFA QREMQQQQHL HSVSSQELGS NFTSIVKSPG 600 NTCSEWGSSH HGKVDWYVNG DDLGCLQRSS SYEVNNNNRG EPDLSWVQSL VKESPPEMME 660 KHAASISGNA PSGSQIDSVD HSVLGSLLEQ MQLDQLVA*

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence

MDTRKLTVET EDSFSSLLEF AANNDVVGFK RSIEYDSSGI DEAALWYVRK KGSKLIVHEE  60
RTPLMVAATY GSVDVLNLLV AQCEVDLNRS CGPDKCTALH CAASGGSINV LDVLKLLISA  120
GADPNIENSD GERPVDVIVC HPKLLGARAA LQELLMNICS GGLVNDYNSR VSVSTSNASS  180
PLLSSSPDCR STCSPSDSVS SPVASKFNDV PSNFTSEKKE YPVDPSLPDI KNSIYSTDEF  240
RMFSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPEFRK GVCRRGDMCE  300
YAHGVFECWL HPAQYRTRLC KDGTSCERRV CFFAHTPEEL RPLYVSTGSA VPSPRSAASA  360
ASVMDMAAAL SFLPGSPLSH SVISPAFNQP ISPTANGMLH SAGAWPQQNV PTLHLPGSNL  420
QSSRLRSSLS ARDIPPVDLN MLQDFDAQQL VGNDLTRFSQ SRSASLNRSG WSKALSPSNL  480
DNLFSAEVTL SPRYSDQAVA SGIFSPRHKS AALNQFQQHS ILPPMTPKVF SPKNGEHPLF  540
QGSFGISSPR ISPRSVEPIS PRNARFSAFA QREMQQQQHL HSVSSQELGS NFTSIVKSPG  600
NTCSEWGSSH HGKVDWYVNG DDLGCLQRSS SYEVNNNNRG EPDLSWVQSL VKESPPEMME  660
KHAASISGNA PSGSQIDSVD HSVLGSLLEQ MQLDQLVA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein