PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu005898.2
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family ARF
Protein Properties Length: 785aa    MW: 87173.3 Da    PI: 6.723
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu005898.2genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.3e-24159260199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   + +++el
  Oeu005898.2 159 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyKEQ-RPSQELIAKDLHGIEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEGGEL 253
                  99****************************86333.45679************************************************..4499*** PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Oeu005898.2 254 RLGIRRA 260
                  ****996 PP
2Auxin_resp112.63.7e-37285366182
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                  +a+a+s+ks+F+v+Y+Pras+++F+v+++k++k++ +++ +G+Rfkm+f+ +dsserr+ G+v+gv d+d++rWpnSkWr+L
  Oeu005898.2 285 VANALSSKSAFQVFYSPRASHADFIVPYQKYVKSTASHLPIGTRFKMKFDLDDSSERRFCGVVTGVGDVDSYRWPNSKWRCL 366
                  689******************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    
MEIDLNLAVG EVEKNACNNG GECDKLGGSS CVYCSLSTST SSCSSNAASA SPSSPCSVSI  60
YMELWHACAG PLTTLPKKGN LVVYFPQGHL EQVASRDMPN FDLPPQIFCR VLDVQLLANR  120
ENDEVYTQLT LLPLPEVRFV RVHEDGEGVT PAKSTSHMFC KTLTASDTST HGGFSVPRRA  180
AEDCFPPLDY KEQRPSQELI AKDLHGIEWK FRHIYRGQPR RHLLTTGWSI FVSQKNLVSG  240
DAVLFLRGEG GELRLGIRRA ARPRNGLPDS VIKNHSSYPN VLSSVANALS SKSAFQVFYS  300
PRASHADFIV PYQKYVKSTA SHLPIGTRFK MKFDLDDSSE RRFCGVVTGV GDVDSYRWPN  360
SKWRCLMVQW DEDIMSNHQD RVSPWDIDFS VPFPPLSIHS SPRMKKMRSS LPVTPHDSRI  420
TGGNSLLDFE ESVRSSKVLQ GQENVGFVSP LFGRDRINRQ LDFEMQPAVR QNPVSNVTEK  480
PNYSEFVKNH APATYTGSTE TNWFPKVLQG QEICSLRSLA GKNDFSVGAW PKPDFGRNAY  540
NAYQTPRPNL YPLASEGARN IFFPCNGIYR ADPDPLMLSY VSDVQRESRV LNSTSIGNAA  600
TVDMGKVPSL ANQPRPLEKS STSTTAQEHF INTSEAVLKG KAPAFKLFGS SLTEDISSLN  660
SLGSNKRSCT KVHKQGNLVG RAIDLSRLHG YDDLLTELER LFSMEGLLQD PEKGWRILYT  720
DSENDMMVVG DDPWRDFVEV VSKIHIYTQE EVEKMTIGMI SDDTQSCLEE MPPVTDVSKS  780
SSVG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein