PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu005588.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 651aa MW: 74303.5 Da PI: 7.6042

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu005588.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.5	1.3e-09	623	644	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + Crffa+ G+C+yGdrCk+ H+ Oeu005588.1 623 KVCRFFAQ-GICRYGDRCKYLHD 644 68****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence
MEKILQVDAT ITTRCRLQIV RDLEVNSTLI PTEAELEEHA YHEESPRAAQ PPQRGFEINI 60 EDLLRTEIEK LEGRLQAVIS TRLDRVEKKV DRLVELAVAG RFHPATSAFD GATSSTAYVP 120 ENEPKDGLEK EVGFDDVTAV HVAERKVDLP EEDSKLEEEE EVRGKNVGRK ELETEPGFDD 180 VRDVPAAETN VEAREEDPKL EEEVRGKNES VGKEIILEEE RPDVEKGIAN FVTLVKHDVD 240 TNESTKGGMI MKLKVDQCRV YLRKHGLRLT GNKDILIGRI MEYLDIVDDG GEKKYPASSF 300 VLNCKGDACT GDVVMFEQNV YEMFSIASRS ANGPPCGTRV VAGRIVKESY GAAKQQHTFT 360 IEVLWSRGEK PLPPLHPLLI KGRNLYRLRT MRQRWEDEGE RQKILSEKHA RGSMARSDRE 420 ARIQEKEMRK MHKSNRVARL ENQNKHGKLS DSIPINPEKQ GNQPQKQQEK NNAVQEGYSQ 480 REYCHPKTCG VSILQQQESL QGKSNDPSNA RVLPERLHHR QPFTVVNCSF PRSPNRNLQY 540 NNFNTSRSPI QVQTQSYIHK SNYQQIPILN HIFKDNKNNN DTRSSLLGPY PMSNSVQIHS 600 FRTQENFNAT RNPVQRQGPE RKKVCRFFAQ GICRYGDRCK YLHDHVGNRN *

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence

MEKILQVDAT ITTRCRLQIV RDLEVNSTLI PTEAELEEHA YHEESPRAAQ PPQRGFEINI  60
EDLLRTEIEK LEGRLQAVIS TRLDRVEKKV DRLVELAVAG RFHPATSAFD GATSSTAYVP  120
ENEPKDGLEK EVGFDDVTAV HVAERKVDLP EEDSKLEEEE EVRGKNVGRK ELETEPGFDD  180
VRDVPAAETN VEAREEDPKL EEEVRGKNES VGKEIILEEE RPDVEKGIAN FVTLVKHDVD  240
TNESTKGGMI MKLKVDQCRV YLRKHGLRLT GNKDILIGRI MEYLDIVDDG GEKKYPASSF  300
VLNCKGDACT GDVVMFEQNV YEMFSIASRS ANGPPCGTRV VAGRIVKESY GAAKQQHTFT  360
IEVLWSRGEK PLPPLHPLLI KGRNLYRLRT MRQRWEDEGE RQKILSEKHA RGSMARSDRE  420
ARIQEKEMRK MHKSNRVARL ENQNKHGKLS DSIPINPEKQ GNQPQKQQEK NNAVQEGYSQ  480
REYCHPKTCG VSILQQQESL QGKSNDPSNA RVLPERLHHR QPFTVVNCSF PRSPNRNLQY  540
NNFNTSRSPI QVQTQSYIHK SNYQQIPILN HIFKDNKNNN DTRSSLLGPY PMSNSVQIHS  600
FRTQENFNAT RNPVQRQGPE RKKVCRFFAQ GICRYGDRCK YLHDHVGNRN *