PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu005001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | NF-YC | ||||||||
Protein Properties | Length: 229aa MW: 25442.7 Da PI: 4.7146 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 175.9 | 4.1e-55 | 34 | 138 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 q+++fw++q ie+++df+nh+lPlarikki+kadedv+misaeaP+l+skacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdi Oeu005001.1 34 QIHMFWNYQrqeIEQVNDFRNHQLPLARIKKIMKADEDVRMISAEAPILFSKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 131 6899***998899************************************************************************************* PP NF-YC 96 vprdelk 102 vprd++k Oeu005001.1 132 VPRDDIK 138 ****975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MENIPHQMAA TASQPAMYPS QTPYPQLLQQ QQQQIHMFWN YQRQEIEQVN DFRNHQLPLA 60 RIKKIMKADE DVRMISAEAP ILFSKACELF ILELTIRSWL HAEENKRRTL QKNDIAAAIT 120 RTDIFDFLVD IVPRDDIKEE AATFGAILGP PGVATGATGV PYYYPPMGQP MMGQPAMPGM 180 DQGIYLQAPP HPPSQAWQSV WQTTPDDGSY ASGGGGTSSN QANLDGQD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 113 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 4e-77 | NF-YC family protein |