PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu004877.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | LBD | ||||||||
Protein Properties | Length: 314aa MW: 34814.2 Da PI: 6.7936 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.2 | 1.2e-42 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++Cv+apyfp ++p+kf nvhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++ +l+ +k Oeu004877.1 7 PCAACKFLRRKCTQECVFAPYFPPDNPQKFTNVHKVFGASNVAKLLNELNASQREDAVNSLAYEAEYRLRDPVYGCVGLISILQHKLKQVQLDLDNAK 104 7*********************************************************************************************9998 PP DUF260 99 ee 100 +e Oeu004877.1 105 KE 106 87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence |
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DNPQKFTNVH KVFGASNVAK LLNELNASQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISILQ HKLKQVQLDL DNAKKELAHY IGPSAMLPII 120 NHPGFMHQHP NFGASAFQVM PYNMQSMMGV PAGLPHGALM IGDSQQQPPT QEQQILEAQQ 180 LAVVAAAREQ EMFRNYELQQ HQQQNGLVRF NSGFDTTRGS VTATGYNKMI PATAAADMPP 240 ALALGSYEGN PYGHHIQQQA EEHSHSHHPH QLELLPHELL LQQQNATIHH ETQQLQTSLP 300 PRARSDEGRS IDS* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-78 | LBD family protein |