PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu004293.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | ARF | ||||||||
Protein Properties | Length: 229aa MW: 25325.3 Da PI: 8.6001 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35 | 2.5e-11 | 39 | 83 | 53 | 99 |
EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++++r+ Oeu004293.1 39 DGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLLGIRRA 83 578899*************************..8899999****997 PP | |||||||
2 | Auxin_resp | 89.2 | 7.8e-30 | 115 | 180 | 19 | 83 |
Auxin_resp 19 astseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 +s+seFv++++k+ ka + ++vs+GmRf+m fete+ss rr++Gt++g+ dldpvrWpnS+Wrs+k Oeu004293.1 115 TSASEFVIPLSKYIKAAYhTRVSIGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWPNSHWRSVK 180 689**********99988689******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MQEPLTGDGK DEKPNSRPLK LDGRPRMRTC TEDLEDPGDG QPKRHLLTTG WSVFVSAKRL 60 VAGDSVLFIW NEKNQLLLGI RRATRPQTVM PSSVLSSDSM HIGLLLTLLL LIVATSASEF 120 VIPLSKYIKA AYHTRVSIGM RFRMLFETEE SSVRRYMGTI TGIGDLDPVR WPNSHWRSVK 180 CWVYKNPASS GFVDFSSGER GLCLCGLQTG FLLASSTSLL VSVDCVCE* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 7e-74 | ARF family protein |