PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu003990.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C2H2

Protein Properties

Length: 470aa MW: 51497.8 Da PI: 8.8009

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu003990.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Oeu003990.1 83 FICEICNKGFQRDQNLQLHRRGH 105 89*******************88 PP
2	zf-C2H2	12.6	0.00041	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Oeu003990.1 160 WKCEKCSKRYAVQSDWKAHSKIC 182 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MLHGMLVDDS MSNLTSASNE ASISSSNRTE IPTTVYPQQS FAISPDNPTQ PAPKKKRNLP 60 GNPDPEAEVV ALSPKSLLAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRNSKEVV 120 KKKVYICPEP SCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA VQSDWKAHSK 180 ICGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESARSMT QMNPILSSQQ GTSSTPHPPH 240 LHGLQPFSLK EEQQMFSPPR SELFTSSSRL EQSILHQENT NPKNPTFSSA LNPSHHMSAT 300 ALLQKAAQIG VTMSSSNSKT CTAQSDGIFR AHLAHMGAPG FSATSLESST AGAGLGLSSS 360 REEIATGFVN VTSGCMEQLV GATVGANSSM LHDMNMLTSL PPNSGFEGSA AFEDTFNRIG 420 AGGNDGMTRD FLGLRAFRHR DFLNMAGFGQ MGSSSYDQQT HQHQSPWQN*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MLHGMLVDDS MSNLTSASNE ASISSSNRTE IPTTVYPQQS FAISPDNPTQ PAPKKKRNLP  60
GNPDPEAEVV ALSPKSLLAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRNSKEVV  120
KKKVYICPEP SCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA VQSDWKAHSK  180
ICGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESARSMT QMNPILSSQQ GTSSTPHPPH  240
LHGLQPFSLK EEQQMFSPPR SELFTSSSRL EQSILHQENT NPKNPTFSSA LNPSHHMSAT  300
ALLQKAAQIG VTMSSSNSKT CTAQSDGIFR AHLAHMGAPG FSATSLESST AGAGLGLSSS  360
REEIATGFVN VTSGCMEQLV GATVGANSSM LHDMNMLTSL PPNSGFEGSA AFEDTFNRIG  420
AGGNDGMTRD FLGLRAFRHR DFLNMAGFGQ MGSSSYDQQT HQHQSPWQN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-117	C2H2 family protein