PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu003481.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 388aa MW: 43424.6 Da PI: 9.1681

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu003481.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.4e-07	85	109	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C f++ G C G+ C+FaHg Oeu003481.1 85 YKTRMCLKFLE-GNCLNGEHCTFAHG 109 9********.***********9 PP
2	zf-CCCH	22.4	2.1e-07	144	166	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++Cr f+ + C+yG++C+F H Oeu003481.1 144 MKNCRKFYNGEDCPYGENCNFLH 166 679****66********** PP
3	zf-CCCH	32.1	2e-10	222	246	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt +C+ +ar G+C++G+rC++aHg Oeu003481.1 222 WKTIICNKWAR-GQCPFGERCCYAHG 246 89*******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MKFPDHPLPN PPFMGRTGGD GGGFFPPPPI NHPRPESSIS SYEHPPPFKR LKMSSDNIPN 60 SVPLLNPKVN PPIHPGSKGI TNIFYKTRMC LKFLEGNCLN GEHCTFAHGV EDVRKPPPNW 120 KELVQKKDKR VGSWSDEQRM VHGMKNCRKF YNGEDCPYGE NCNFLHEYPT VETHISRQRK 180 SSAISIGATG SINVNTSVSH QPESQKHVDS VVDASRSNTV YWKTIICNKW ARGQCPFGER 240 CCYAHGHSGG FHIGGLPIMC DVLKGFLKVF CETPSVHQAK SFKLAKHLGF TELPQCKFKV 300 GLLKKYILLE LQWPAAHAEP EPTLNSHQIP AKPLSTPAID SSPATKLINF PKEKNESDEN 360 NSKKWKLNRR VNGIYGDWLD DLSPPRC*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MKFPDHPLPN PPFMGRTGGD GGGFFPPPPI NHPRPESSIS SYEHPPPFKR LKMSSDNIPN  60
SVPLLNPKVN PPIHPGSKGI TNIFYKTRMC LKFLEGNCLN GEHCTFAHGV EDVRKPPPNW  120
KELVQKKDKR VGSWSDEQRM VHGMKNCRKF YNGEDCPYGE NCNFLHEYPT VETHISRQRK  180
SSAISIGATG SINVNTSVSH QPESQKHVDS VVDASRSNTV YWKTIICNKW ARGQCPFGER  240
CCYAHGHSGG FHIGGLPIMC DVLKGFLKVF CETPSVHQAK SFKLAKHLGF TELPQCKFKV  300
GLLKKYILLE LQWPAAHAEP EPTLNSHQIP AKPLSTPAID SSPATKLINF PKEKNESDEN  360
NSKKWKLNRR VNGIYGDWLD DLSPPRC*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	4e-43	C3H family protein