PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu002089.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

M-type_MADS

Protein Properties

Length: 389aa MW: 44456.3 Da PI: 5.453

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu002089.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59.5	4e-19	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e+ + r+ t+ kRr+gilKKA+E+SvLCd+++ +++fs+tgk Oeu002089.1 10 RLESMTSRNGTYGKRRAGILKKAQEISVLCDIDIILLMFSPTGK 53 679999************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MGRVKLKIQR LESMTSRNGT YGKRRAGILK KAQEISVLCD IDIILLMFSP TGKPSIFRGQ 60 HSNLDEMIAK YAQLSPTERT KRRLESLETL KRNFKKLDQD VDIEEFMAAS SPSIEEMLNQ 120 AKILQAQLTE VQKRLGFWTN PDKIEDIEHL CQMENSLRES LNRIHMQKLE NLGNDQLMPL 180 DCTSQAEYGM HFPMINGGDQ DGQTQTWFPN VERQHMMLPD EPNFLSCRDM GCSIDTSLPS 240 SSGLFGVKKE ADLANSKLVD IGRQDTITIN DYTNSSSHMR LPLGEQYSYH SYGNLNVPEL 300 MEPEREVNFQ ASTFDYQIKP EREVNFQASS MDYQINGNFE LPRSIYNDFQ HNLVSAPGPS 360 VLSNLNDHSY QQQVSFLLNL WHLLAGFR*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MGRVKLKIQR LESMTSRNGT YGKRRAGILK KAQEISVLCD IDIILLMFSP TGKPSIFRGQ  60
HSNLDEMIAK YAQLSPTERT KRRLESLETL KRNFKKLDQD VDIEEFMAAS SPSIEEMLNQ  120
AKILQAQLTE VQKRLGFWTN PDKIEDIEHL CQMENSLRES LNRIHMQKLE NLGNDQLMPL  180
DCTSQAEYGM HFPMINGGDQ DGQTQTWFPN VERQHMMLPD EPNFLSCRDM GCSIDTSLPS  240
SSGLFGVKKE ADLANSKLVD IGRQDTITIN DYTNSSSHMR LPLGEQYSYH SYGNLNVPEL  300
MEPEREVNFQ ASTFDYQIKP EREVNFQASS MDYQINGNFE LPRSIYNDFQ HNLVSAPGPS  360
VLSNLNDHSY QQQVSFLLNL WHLLAGFR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-82	M-type_MADS family protein