PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu001589.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

Whirly

Protein Properties

Length: 596aa MW: 66611.5 Da PI: 9.481

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu001589.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	210.4	1.9e-65	421	559	1	139
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98 svyk+kaal+v+++ p+f ldsg++k++++G +ll++a+a+++r+ydW++kq+f+ls+ e+++l++l++k+sceffhdp++++s+eG+vrk+lkveP Oeu001589.1 421 SVYKGKAALTVEPRPPEFYPLDSGAFKVSKEGYVLLQFAPAAGVRQYDWSRKQVFSLSVMEIGHLISLGAKDSCEFFHDPFKGKSDEGRVRKVLKVEP 518 79********************************************************************************************** PP Whirly 99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 lpdGsG+f+nlsv+n+l++ +es+++Pv+kaefav++s ++ Oeu001589.1 519 LPDGSGHFFNLSVQNKLINLDESIYIPVTKAEFAVFISTFN 559 **********************************99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence
MNDTSRDQPV APIISSSTTS NSESNSSSSK HEEELQISSR LRKFAFNDLK LATRNFRPES 60 LLGEGGFGCV FKGWIEENGT APVKPGTGLT VAVKILNHDG LQGHKEWLAE VNFLGDLIHP 120 NLVKLIGSCI EDDQRLLVYE FMPRGSLENH LFRRSLPLPW SIRMKIALGA AKGLAFLHEE 180 AERPVIYRDF KTSNILLDSE YNSKLSDFGL AKDAPDEGKT HVSTRVMGTY GYAAPEYVMT 240 GHLTSKSDVY SFGVVLLEIL SGRRSMDKNR PNGEHNLVEW ARPHLGERRR FYRLIDPRLE 300 GHFSIKGAQK AAQLVAHCLN RDAKARPLMS EVVEALKPLP NLKDMASSSY YFQSMQADRV 360 GSSPNARNGL RTQGSFSRNG QLHPRSLSFH NGSHASPYHN KFVQSPKPNG HLPPRVYVGY 420 SVYKGKAALT VEPRPPEFYP LDSGAFKVSK EGYVLLQFAP AAGVRQYDWS RKQVFSLSVM 480 EIGHLISLGA KDSCEFFHDP FKGKSDEGRV RKVLKVEPLP DGSGHFFNLS VQNKLINLDE 540 SIYIPVTKAE FAVFISTFNY ILPYLLGWHT FANSIRPEGE SRANARSGVE NEWNR*

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence

MNDTSRDQPV APIISSSTTS NSESNSSSSK HEEELQISSR LRKFAFNDLK LATRNFRPES  60
LLGEGGFGCV FKGWIEENGT APVKPGTGLT VAVKILNHDG LQGHKEWLAE VNFLGDLIHP  120
NLVKLIGSCI EDDQRLLVYE FMPRGSLENH LFRRSLPLPW SIRMKIALGA AKGLAFLHEE  180
AERPVIYRDF KTSNILLDSE YNSKLSDFGL AKDAPDEGKT HVSTRVMGTY GYAAPEYVMT  240
GHLTSKSDVY SFGVVLLEIL SGRRSMDKNR PNGEHNLVEW ARPHLGERRR FYRLIDPRLE  300
GHFSIKGAQK AAQLVAHCLN RDAKARPLMS EVVEALKPLP NLKDMASSSY YFQSMQADRV  360
GSSPNARNGL RTQGSFSRNG QLHPRSLSFH NGSHASPYHN KFVQSPKPNG HLPPRVYVGY  420
SVYKGKAALT VEPRPPEFYP LDSGAFKVSK EGYVLLQFAP AAGVRQYDWS RKQVFSLSVM  480
EIGHLISLGA KDSCEFFHDP FKGKSDEGRV RKVLKVEPLP DGSGHFFNLS VQNKLINLDE  540
SIYIPVTKAE FAVFISTFNY ILPYLLGWHT FANSIRPEGE SRANARSGVE NEWNR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14410.1	1e-105	Whirly family protein