PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu000781.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 924aa MW: 104040 Da PI: 8.8583

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu000781.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.5	8.5e-07	209	230	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + Cr+fa+ G C++G++C+F H+ Oeu000781.1 209 RTCRDFAA-GRCRRGSQCRFFHP 230 57****.*********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 924 aa Download sequence
MGENRKRKSL WDMEDETKHL SGMSEFNSST GKDKHSSFDS GRRHEFSASG IASAPKSIDH 60 SGWPNWESLD GNTVAPVVDS FYKNKQDNAE VKEIGRGKSY NKNLSPGFDG SEWRKRDHTP 120 EYDWSSSGRY PRRGRSRSRS RSRSGRRGRS RSREKARGRG RGRGRSRSRS RSRSDGSARG 180 QTRSRTPIRD HRQSGGWSDG RSRHEKLSRT CRDFAAGRCR RGSQCRFFHP DNISSSDRDR 240 VEDDRADNWR NRPELGHISG HSNDRGPGSQ PRNDVYDSYY EEDDKFRNQS RNAFPCRDFI 300 KGKCRWGDTC RFSHHEASGD SYSKVTRNAS FGKDFEQHAN KNVKPLCKFF AEGKCYRDNC 360 RFSHERVLKL NNLEVRPGED KSSFSLDDKS KWWNGPSWDN SVEVSDSVKS SGWTESVVAN 420 TNVVGETDIG RTDNRLDHNL EDESRTWGIP KQNDSYLNRE KQLSLFGESG SYDVDMDISE 480 PMSKENIADK QKRIFHDSQL RNEDGVSHVY GQNTMQEAHG LAVITSQQDF FADSHIQQRH 540 LRPLEDNDVN LFGSDALNEV NGSRNTEHPV LFPGQIFSQN GESLFPQHSL LSNETDRKQH 600 LLIDLNGPQQ FKISPPRLQS QMQNLQSAVK TSEMSEHQAP QFVSNDLTNE QAAQMTKSPV 660 GTAGDQVAPV MDSSAFMAQR FVDEEQKPQV FAGLDASSST GRVPNSDTAH FSPLVYTVNS 720 NPVTSSLDLL DPIRNGNADN ENNQNLASAT VSHSVKQKNN MHVERSSPVS TVDPVFGGST 780 VKHCDSPKAK EQEKISNSEV NGGGQTVDES KGGQENKHSE NLDGHGKVDE GSAMKDDKGM 840 RLFKNALVEF VKEILKPTWK EGRMSREVHK TIVKKVVDKV TSTMQGDHIP KTQSKVEQYL 900 TASKLKITKL VEAYLERSLK TES*

Sequence ? help Back to Top

Protein Sequence Length: 924 aa Download sequence

MGENRKRKSL WDMEDETKHL SGMSEFNSST GKDKHSSFDS GRRHEFSASG IASAPKSIDH  60
SGWPNWESLD GNTVAPVVDS FYKNKQDNAE VKEIGRGKSY NKNLSPGFDG SEWRKRDHTP  120
EYDWSSSGRY PRRGRSRSRS RSRSGRRGRS RSREKARGRG RGRGRSRSRS RSRSDGSARG  180
QTRSRTPIRD HRQSGGWSDG RSRHEKLSRT CRDFAAGRCR RGSQCRFFHP DNISSSDRDR  240
VEDDRADNWR NRPELGHISG HSNDRGPGSQ PRNDVYDSYY EEDDKFRNQS RNAFPCRDFI  300
KGKCRWGDTC RFSHHEASGD SYSKVTRNAS FGKDFEQHAN KNVKPLCKFF AEGKCYRDNC  360
RFSHERVLKL NNLEVRPGED KSSFSLDDKS KWWNGPSWDN SVEVSDSVKS SGWTESVVAN  420
TNVVGETDIG RTDNRLDHNL EDESRTWGIP KQNDSYLNRE KQLSLFGESG SYDVDMDISE  480
PMSKENIADK QKRIFHDSQL RNEDGVSHVY GQNTMQEAHG LAVITSQQDF FADSHIQQRH  540
LRPLEDNDVN LFGSDALNEV NGSRNTEHPV LFPGQIFSQN GESLFPQHSL LSNETDRKQH  600
LLIDLNGPQQ FKISPPRLQS QMQNLQSAVK TSEMSEHQAP QFVSNDLTNE QAAQMTKSPV  660
GTAGDQVAPV MDSSAFMAQR FVDEEQKPQV FAGLDASSST GRVPNSDTAH FSPLVYTVNS  720
NPVTSSLDLL DPIRNGNADN ENNQNLASAT VSHSVKQKNN MHVERSSPVS TVDPVFGGST  780
VKHCDSPKAK EQEKISNSEV NGGGQTVDES KGGQENKHSE NLDGHGKVDE GSAMKDDKGM  840
RLFKNALVEF VKEILKPTWK EGRMSREVHK TIVKKVVDKV TSTMQGDHIP KTQSKVEQYL  900
TASKLKITKL VEAYLERSLK TES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	5	34	RKRKSLWDMEDETKHLSGMSEFNSSTGKDK
2	133	141	RGRSRSRSR
3	133	143	RGRSRSRSRSR
4	135	143	RGRSRSRSR
5	157	167	RGRSRSRSRSR
6	159	169	RGRSRSRSRSR
7	161	171	RGRSRSRSRSR
8	163	171	RGRSRSRSR
9	163	173	RGRSRSRSRSR
10	165	173	RGRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-13	C3H family protein