PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu000495.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | LSD | ||||||||
Protein Properties | Length: 171aa MW: 17953 Da PI: 8.789 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 44.3 | 3e-14 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrt+L YPrGA++V+CalC++V Oeu000495.1 7 CGGCRTVLLYPRGATNVCCALCNAV 31 ************************9 PP | |||||||
2 | zf-LSD1 | 35.7 | 1.4e-11 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+ rGA+sVRC++C tV Oeu000495.1 46 CRGCRTLLMHARGATSVRCSCCRTV 70 9***********************9 PP | |||||||
3 | zf-LSD1 | 47.1 | 3.9e-15 | 84 | 107 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ Oeu000495.1 84 CGNCRTMLMYPAGAPSVKCAVCQY 107 **********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence |
MQSQVVCGGC RTVLLYPRGA TNVCCALCNA VTAVPPPGME MAQLICRGCR TLLMHARGAT 60 SVRCSCCRTV NLVPASNHVA HVNCGNCRTM LMYPAGAPSV KCAVCQYITA VNMGESRIPI 120 PVQRPDGNST ASNLATSTAT SRTQNQTVVV QNPMTVDESG KLPRRLIGVT * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 4e-59 | LSD family protein |