PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu000336.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | C3H | ||||||||
Protein Properties | Length: 376aa MW: 41965 Da PI: 7.6706 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.8 | 6.6e-07 | 132 | 153 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+ f++ G C+ Gd C +aHg Oeu000336.1 132 SACPEFRK-GNCRKGDACEYAHG 153 67******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence |
MQPEPVRHHH QTMMIGERNQ DGLTVHVPPI PWSFTTDDPA SYNLSPNMNI NGGSATDDCS 60 IFTALQRYLP SNSIREGDLT VDAYTCDHFR MFEFKVRKCS LGKSHDWTEC PYAHPGEKAR 120 RRDPRKFHYS GSACPEFRKG NCRKGDACEY AHGVFECWLH PARYRTQPCK DGLNCKRRVC 180 FFAHSTDQLR VLSPRAESYD GSPHRLAFMS SSDSGSPPTE SPPMSPMTSA TATSISSLSR 240 SLGSNSINEM IASLRQLQLN KVKSIPPSRN LQVGCSSSGL GSPRFPITRP GCFSLPTTPT 300 KSLTRASLGY ADPWEKDVGY EEEPAMERIE SGRDLRDQMF EKLSKENPLG NWPSLNANQA 360 QVPNHDVDWV SDMLN* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-112 | C3H family protein |