PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu000320.3

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C3H

Protein Properties

Length: 617aa MW: 67454.6 Da PI: 9.0875

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu000320.3	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.3e-06	258	278	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+++ G+C++G+ C F+H Oeu000320.3 258 PCNNYTSQGFCSRGSDCLFSH 278 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MLKEVEVQLQ LKEIEFEELI FNSDSMLLEE RTTEEGLISG VDKELFTWDD EDRGFISGAF 60 NRMDDDNDPM EVDIVRKKRD SLYQTVVHYS AMDTQSIDPT GASLENPSAH GEILQENNVE 120 KQVSAANGDK KKKKNGPLTK ERRAKKKKKD RIKRAEKNKK LGVKRLKLQP VLKPKTITYC 180 RHYLKGRCLE GEKCKFSHDT IPSTKSKCTR GKCVAVGEEK GLGCSHVTML ALPCCHFARH 240 SCMKGDDCPF DHQLSKYPCN NYTSQGFCSR GSDCLFSHKL LAESSCPASN VSKPELKPQQ 300 QMMPATKGSF TTSNLTELEV KAPSFLTNSK PNKHLNIHGT SPQNADAKFS SAMDSAGKSV 360 EQHVSHPAQG ASAQAPNGVN FLFHAKSLLG DSSKHKQAGL SLKADVGNNV VCDTRFKVLG 420 NVQKPNEIAK TVPPRKPVGI NFLSFGKILT DDSSGKKISS LFSTENNEIE KESTVDLVQN 480 MKENAQRTST VASPWGTNFL SFDKGPLNDS SVKNQAGLRP SDGNILLPFV QPKEVTPDRL 540 QIPTKMPSID LSAAGCSTSI SSSSKTSLLL NKPSSVQKAV QSTLAFAAKF EPEIKLSRSI 600 CSPAVRGNIN GEAGNS*

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MLKEVEVQLQ LKEIEFEELI FNSDSMLLEE RTTEEGLISG VDKELFTWDD EDRGFISGAF  60
NRMDDDNDPM EVDIVRKKRD SLYQTVVHYS AMDTQSIDPT GASLENPSAH GEILQENNVE  120
KQVSAANGDK KKKKNGPLTK ERRAKKKKKD RIKRAEKNKK LGVKRLKLQP VLKPKTITYC  180
RHYLKGRCLE GEKCKFSHDT IPSTKSKCTR GKCVAVGEEK GLGCSHVTML ALPCCHFARH  240
SCMKGDDCPF DHQLSKYPCN NYTSQGFCSR GSDCLFSHKL LAESSCPASN VSKPELKPQQ  300
QMMPATKGSF TTSNLTELEV KAPSFLTNSK PNKHLNIHGT SPQNADAKFS SAMDSAGKSV  360
EQHVSHPAQG ASAQAPNGVN FLFHAKSLLG DSSKHKQAGL SLKADVGNNV VCDTRFKVLG  420
NVQKPNEIAK TVPPRKPVGI NFLSFGKILT DDSSGKKISS LFSTENNEIE KESTVDLVQN  480
MKENAQRTST VASPWGTNFL SFDKGPLNDS SVKNQAGLRP SDGNILLPFV QPKEVTPDRL  540
QIPTKMPSID LSAAGCSTSI SSSSKTSLLL NKPSSVQKAV QSTLAFAAKF EPEIKLSRSI  600
CSPAVRGNIN GEAGNS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	149	KKKKKNGPLTKERRAKKKKK
2	130	153	KKKKKNGPLTKERRAKKKKKDRIK
3	130	159	KKKKKNGPLTKERRAKKKKKDRIKRAEKNK
4	131	150	KKKKKNGPLTKERRAKKKKK
5	131	154	KKKKKNGPLTKERRAKKKKKDRIK
6	131	160	KKKKKNGPLTKERRAKKKKKDRIKRAEKNK
7	132	151	KKKKKNGPLTKERRAKKKKK
8	142	150	RRAKKKKKD
9	145	174	KKKKKNGPLTKERRAKKKKKDRIKRAEKNK
10	146	175	KKKKKNGPLTKERRAKKKKKDRIKRAEKNK