PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT40398 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 249aa MW: 27471.4 Da PI: 7.0482 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00077 | 104 | 126 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k Fs+ L H++ H OIT40398 104 FSCSFCEKKFSTFQALGGHQNAH 126 89*****************9988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MDSFSMKKPC SSEASSISAT SEEIDTNTKK MKGKVMDLGS ELMPHELSSA SALLDLKVHN 60 GASNLELNLL NSTSSMKNSA PTGESSNEAM PNNKQMPSLE TRVFSCSFCE KKFSTFQALG 120 GHQNAHKQER DLAKRRRTRS SLSVQGDSSA IHKPSPYNPW SFFSGYNYRF NPEKWSSSSS 180 SLFRTENTLG IGGAFKFENK NSAKGFGVRD SPVKVDDNRG GNNKRKMGLG EEDAEENEEE 240 TEIDLDLKL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 4e-15 | C2H2 family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT40398 |