PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT40347
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 333aa    MW: 38045.4 Da    PI: 5.2569
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT40347genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.4e-15131182155
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++Y+k+L+
  OIT40347 131 QRMTHIAVERNRRKQMNEYLSVLRTLMPQS---YVQRGDQASIVSGAINYVKELE 182
               79****************************...9******************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MALEAVTQQQ QYLYALLGTA NWDGGSGSGP GFDYHNNEAF EFLENNNQNV GEAQEYEDYS  60
NWNLPPPLLV DYSQNDFNQW GQNSSTHVLD HNFTIPDQLP QLESPVEMSS TTRQRRRRTR  120
SKKNQEEIES QRMTHIAVER NRRKQMNEYL SVLRTLMPQS YVQRGDQASI VSGAINYVKE  180
LEQQLQFLCG QKHLNDKKLQ DVNGETSPFS EFFSIPQYST TMTAATSENG ASVNEYYTRN  240
QQLPATADIE VTMVENHANL KIRSKRRLRL LPRIISGLES LRLIVLHLNV SKVDQFVLCS  300
LSLKVEEDCK LSSVEDIAAV VNQILGRIHE EAN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113120RQRRRRTR
2132143RMTHIAVERNRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-62bHLH family protein