PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT40105

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

CO-like

Protein Properties

Length: 407aa MW: 45040.1 Da PI: 5.6924

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40105	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.7	1.8e-06	3	44	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++C+ ++e++ + +C+++ +lC +C + H+ H++ OIT40105 3 HICEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44 68*****************************65677777765 PP
2	CCT	62.3	1.5e-21	350	393	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+ktRkF+K++rY+sRKa+A+ R RvKGrFvk+ OIT40105 350 RSNAVLRYKEKKKTRKFDKHVRYASRKARADVRRRVKGRFVKAG 393 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MGHICEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLLCER CNSQPAVVRR 60 VEEKISLCKN CDSISHATGS MHKRQALSCY TGCPSAAELS TIWSFLLDGD STCQKGMGAM 120 SINDNQTRDN QDPQGKYNSQ DMSAAIEMSE LHTSSEKSTT LIESSLPTLG NKQNKVELYT 180 GSKNYSSSKG CYSGMKGSTI YEDDPFAQDF NMDEVDLSFE NYEELFSGSL DNPNQLFEND 240 DIDGLFGTKD MSVSGSSCQD ADAIEGSSIR RVMTMQPACS NAESADSLVS CKTEPSICFA 300 RQASILSFSN LGGESNAGDY QECGASTMFL MGEPPWYHPF PETSLPSSSR SNAVLRYKEK 360 KKTRKFDKHV RYASRKARAD VRRRVKGRFV KAGEAYDYDP LNETRSF

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MGHICEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLLCER CNSQPAVVRR  60
VEEKISLCKN CDSISHATGS MHKRQALSCY TGCPSAAELS TIWSFLLDGD STCQKGMGAM  120
SINDNQTRDN QDPQGKYNSQ DMSAAIEMSE LHTSSEKSTT LIESSLPTLG NKQNKVELYT  180
GSKNYSSSKG CYSGMKGSTI YEDDPFAQDF NMDEVDLSFE NYEELFSGSL DNPNQLFEND  240
DIDGLFGTKD MSVSGSSCQD ADAIEGSSIR RVMTMQPACS NAESADSLVS CKTEPSICFA  300
RQASILSFSN LGGESNAGDY QECGASTMFL MGEPPWYHPF PETSLPSSSR SNAVLRYKEK  360
KKTRKFDKHV RYASRKARAD VRRRVKGRFV KAGEAYDYDP LNETRSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-115	CO-like family protein

Link Out ? help Back to Top
Ensembl	OIT40105