PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT40092

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 471aa MW: 50725 Da PI: 6.9818

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40092	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49	1.1e-15	282	327	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++++P++ K +Ka++L +++eY+k+Lq OIT40092 282 HNQSERKRRDKINQRMKTLQKMVPNS-----SKTDKASMLDEVIEYLKQLQ 327 9**********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MNQCVPSWEL DDTPTPPKLP LQTQSNSLAP DVPSLDYEVA ELTWENGQLA MHGLGPPRVS 60 NNKPISNYGG TLESIVNQGT RSIPHHHQKS ALNGSGHGCD EVVPWFNYNH VVADTSLVPG 120 SLTMAKDALV PCSANSNYHN RPPSSVQVPG LDGSTHVGSC STGATNSRDW MAVPRVRMEP 180 THEWSSRADM SVSGSATCAG DSRQLTVDTY DREMGTGMYT STSMGSPENT SSDKQCTNRT 240 GDDHDSVCHS KSKREVGDEE DEKKGSKNSS SSTKRKRAAA IHNQSERKRR DKINQRMKTL 300 QKMVPNSSKT DKASMLDEVI EYLKQLQSQV NMMSRMNMSP AMMLPLAMQQ QLQMSMMAAP 360 MGMGMGMGMG MGMAGVAGVL DINTLSRPNI TGLPPFIHPT AAAAASFMQP MTSWDGSTDR 420 LNAAATAAAA TDPLAALLAC QSQPMTMDAY SRMAALYQQF QQSAAGSGPK N

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MNQCVPSWEL DDTPTPPKLP LQTQSNSLAP DVPSLDYEVA ELTWENGQLA MHGLGPPRVS  60
NNKPISNYGG TLESIVNQGT RSIPHHHQKS ALNGSGHGCD EVVPWFNYNH VVADTSLVPG  120
SLTMAKDALV PCSANSNYHN RPPSSVQVPG LDGSTHVGSC STGATNSRDW MAVPRVRMEP  180
THEWSSRADM SVSGSATCAG DSRQLTVDTY DREMGTGMYT STSMGSPENT SSDKQCTNRT  240
GDDHDSVCHS KSKREVGDEE DEKKGSKNSS SSTKRKRAAA IHNQSERKRR DKINQRMKTL  300
QKMVPNSSKT DKASMLDEVI EYLKQLQSQV NMMSRMNMSP AMMLPLAMQQ QLQMSMMAAP  360
MGMGMGMGMG MGMAGVAGVL DINTLSRPNI TGLPPFIHPT AAAAASFMQP MTSWDGSTDR  420
LNAAATAAAA TDPLAALLAC QSQPMTMDAY SRMAALYQQF QQSAAGSGPK N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	274	290	KRKRAAAIHNQSERKRR
2	275	291	KRKRAAAIHNQSERKRR
3	286	291	ERKRRD
4	287	292	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	4e-79	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT40092