PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT40054

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 1043aa MW: 115041 Da PI: 4.9099

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40054	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.7	1.3e-18	36	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WTteEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l OIT40054 36 KGQWTTEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 82 799**************************9.**********986 PP
2	Myb_DNA-binding	64.9	1.5e-20	88	134	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde +v++vk++G++ W+tIa++++ gR +kqc++rw+++l OIT40054 88 KGPWSKEEDEVIVELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 134 79****************************.***********97 PP
3	Myb_DNA-binding	49.8	7.9e-16	140	182	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ ++++ gRt++ +k++w+ OIT40054 140 KEAWTQEEELTLIRAHQIYGNK-WAELTKYLP-GRTDNAIKNHWN 182 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1043 aa Download sequence
MESDRISTPS DGTSSSLQRV RPLHGRTSGP TRRSTKGQWT TEEDEILRKA VQRFKGKNWK 60 KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDEVIV ELVKKYGPKK WSTIAQHLPG 120 RIGKQCRERW HNHLNPGINK EAWTQEEELT LIRAHQIYGN KWAELTKYLP GRTDNAIKNH 180 WNSSVKKKLD SYLASGLLAQ FPALPNVNRQ NQSIPSSTKL QQSSEDDSVR KEGTEMEDAS 240 ECSQGSNLAG CSQSTSDMGN TFVHTREEGK LLEDSNYRKD PSSSSAPCSE YYTPAFEDIT 300 FSMAEVPSEL DESKLLEHNF SHDWAASMGK EWQFNPDDIP NISPLELMQD SSGLFMQCLT 360 SNGNHEMVTF PQQNAVKYET TNVGSMVVGL DKPNEMFTSV EGCGMVYPEA GIPQYIPSET 420 GMNGADETAD SLICQSSNYQ ISEGGNMSIE NCCNPLCSHV MGTSSGQPFS IPSQFSSEQS 480 SLMFGTAANQ FHNLSQGNPA QESHTSNSDG FLYPFESGTP CDNIMDDPLL EEQLDQTKDS 540 LQLVSVNDFR STPSNTIQTC QLVNENSSVP EEQKDGGALY YEPPRFPSLD IPFFSCDLIQ 600 SGADAQQEYS PLGIRQLMMT SVNCLTPFRL WDSPSRDGSP DAVLRSAAKT FTSTPSILKK 660 RHRDLVSPLS ERRCEKKLGS DLRQESFSDL SKDFSRLDVM FDEAANEKAT KSSLTTDQTL 720 ELQASSEDKE NINPTEDGSK EDDKVRNGLS SERQLDGGEV HYKEKGTRKG TKGGANSAIG 780 KIKQPSGVLV ELNASDLFFS PDRFGAKSGR TTNLSSKALG NQYARRLEAA SNQGSVSSSF 840 ETSCFSVICS PRIRGKKEGS SFVISTSMQS APAQTALDNS AETSGNGVGA ETVSISGETP 900 YKRSIESPSA WKSPWFINSF LSSPRLDNEL NFEDLALFMS PGDRSYDAIG LMKQLSEQTA 960 GAFADAQEVL GGETPESILR GRNSKNQKAD ENHSLLSANV MSERRTLDFS ECGSPGKGKE 1020 TENFCTSNNS FSSPSSYLLK GCR

Sequence ? help Back to Top

Protein Sequence Length: 1043 aa Download sequence

MESDRISTPS DGTSSSLQRV RPLHGRTSGP TRRSTKGQWT TEEDEILRKA VQRFKGKNWK  60
KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDEVIV ELVKKYGPKK WSTIAQHLPG  120
RIGKQCRERW HNHLNPGINK EAWTQEEELT LIRAHQIYGN KWAELTKYLP GRTDNAIKNH  180
WNSSVKKKLD SYLASGLLAQ FPALPNVNRQ NQSIPSSTKL QQSSEDDSVR KEGTEMEDAS  240
ECSQGSNLAG CSQSTSDMGN TFVHTREEGK LLEDSNYRKD PSSSSAPCSE YYTPAFEDIT  300
FSMAEVPSEL DESKLLEHNF SHDWAASMGK EWQFNPDDIP NISPLELMQD SSGLFMQCLT  360
SNGNHEMVTF PQQNAVKYET TNVGSMVVGL DKPNEMFTSV EGCGMVYPEA GIPQYIPSET  420
GMNGADETAD SLICQSSNYQ ISEGGNMSIE NCCNPLCSHV MGTSSGQPFS IPSQFSSEQS  480
SLMFGTAANQ FHNLSQGNPA QESHTSNSDG FLYPFESGTP CDNIMDDPLL EEQLDQTKDS  540
LQLVSVNDFR STPSNTIQTC QLVNENSSVP EEQKDGGALY YEPPRFPSLD IPFFSCDLIQ  600
SGADAQQEYS PLGIRQLMMT SVNCLTPFRL WDSPSRDGSP DAVLRSAAKT FTSTPSILKK  660
RHRDLVSPLS ERRCEKKLGS DLRQESFSDL SKDFSRLDVM FDEAANEKAT KSSLTTDQTL  720
ELQASSEDKE NINPTEDGSK EDDKVRNGLS SERQLDGGEV HYKEKGTRKG TKGGANSAIG  780
KIKQPSGVLV ELNASDLFFS PDRFGAKSGR TTNLSSKALG NQYARRLEAA SNQGSVSSSF  840
ETSCFSVICS PRIRGKKEGS SFVISTSMQS APAQTALDNS AETSGNGVGA ETVSISGETP  900
YKRSIESPSA WKSPWFINSF LSSPRLDNEL NFEDLALFMS PGDRSYDAIG LMKQLSEQTA  960
GAFADAQEVL GGETPESILR GRNSKNQKAD ENHSLLSANV MSERRTLDFS ECGSPGKGKE  1020
TENFCTSNNS FSSPSSYLLK GCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT40054