PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT39754 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 185aa MW: 20722.7 Da PI: 5.8101 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.5 | 5.2e-39 | 12 | 108 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C+aCk+lrr+C++dC++ p+fp+++p+kf +vh++FGasn+ k+l+++p ++reda+ s+vyeA ar+rdPvyG+vg+i++lq+++ +l++el+++ OIT39754 12 PCSACKFLRRRCTQDCIFLPHFPSAEPQKFIAVHRIFGASNINKILQETPADNREDAVISMVYEATARLRDPVYGCVGIISALQKHVFHLQSELNEA 108 7********************************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence |
MSSTSKKNKH MPCSACKFLR RRCTQDCIFL PHFPSAEPQK FIAVHRIFGA SNINKILQET 60 PADNREDAVI SMVYEATARL RDPVYGCVGI ISALQKHVFH LQSELNEALA EVMSLQTQLS 120 DALSLPSLIE GSPITPENHE FLHFQKPSEQ NAYANASDAL LLLPEAADHY CLQETEVLQL 180 PYLDI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 3e-46 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT39754 |