PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT39711

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 370aa MW: 42125.1 Da PI: 6.5545

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT39711	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	105.9	2.1e-33	99	209	1	99
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 f+k ltpsdv+k++rlv+pk++ae++ ++++e++ l +edesg+sW+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+++ r + OIT39711 99 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgnnnnnnnESSTEKGLLLGFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDIVLFERH-RfD 198 99***************************999999877788999*********************************************75.559 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ OIT39711 199 GDRLFIGWRRR 209 999****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MSINHTISSS ELPETVWWTK QQQYMMMDNS SSKKTSSPSQ FYHHHPPTPP ETQTTTMFGF 60 NLNNMSNNEE DEELEEQITE DKDQNIEQRE EEIPKEHLFE KPLTPSDVGK LNRLVIPKQH 120 AEKYFPLSGN NNNNNNESST EKGLLLGFED ESGKSWRFRY SYWNSSQSYV LTKGWSRFVK 180 EKRLDAGDIV LFERHRFDGD RLFIGWRRRN TAVSASVQES SAVVAPPGMV GGGGWAQVYY 240 AGSGGHPYPG AALPYQPDCL HAGRGVLQNQ TTASVNNTRR QVRLFGVNLE CEADEPSWSE 300 PPSTPDRGGS STSSHHHQGQ GQGQASQHYY QYQFQHSKPH VAASSYNNIH HNHMDMNFSR 360 DVNQMRYHQG

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MSINHTISSS ELPETVWWTK QQQYMMMDNS SSKKTSSPSQ FYHHHPPTPP ETQTTTMFGF  60
NLNNMSNNEE DEELEEQITE DKDQNIEQRE EEIPKEHLFE KPLTPSDVGK LNRLVIPKQH  120
AEKYFPLSGN NNNNNNESST EKGLLLGFED ESGKSWRFRY SYWNSSQSYV LTKGWSRFVK  180
EKRLDAGDIV LFERHRFDGD RLFIGWRRRN TAVSASVQES SAVVAPPGMV GGGGWAQVYY  240
AGSGGHPYPG AALPYQPDCL HAGRGVLQNQ TTASVNNTRR QVRLFGVNLE CEADEPSWSE  300
PPSTPDRGGS STSSHHHQGQ GQGQASQHYY QYQFQHSKPH VAASSYNNIH HNHMDMNFSR  360
DVNQMRYHQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	7e-65	B3 family protein

Link Out ? help Back to Top
Ensembl	OIT39711