PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT39563

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 185aa MW: 21386.8 Da PI: 9.7201

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT39563	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.9	1.8e-32	106	164	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC vkk+v+r ++d+ vv++tYeg H h+ OIT39563 106 LDDGYRWRKYGQKAVKNNRFPRSYYRCTHQGCDVKKQVQRLSKDEGVVVTTYEGMHSHP 164 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence
MENYQHFFPN YSSSSSDQFS LMNMMNNNSH TKAAELTQDN RKSSGFLGLM ASMEAPSSSV 60 VTDHTNSIPY NSNDQNEVRS GKKNKGEKKI KKPRYAFQTR SQVDILDDGY RWRKYGQKAV 120 KNNRFPRSYY RCTHQGCDVK KQVQRLSKDE GVVVTTYEGM HSHPIEKSTD NFEHILTQMQ 180 IYASF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	6e-60	WRKY family protein

Link Out ? help Back to Top
Ensembl	OIT39563