PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT39400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 178aa MW: 20103.8 Da PI: 6.4953 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.3 | 9.5e-42 | 11 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+l+r+C+++C +apyf +++pkkfanvhk+FGasnv+k+l+++pe++red+++slvyeAe+r+rdPvyG++g i +lq+++ +l+++l l+++ OIT39400 11 SCAACKFLKRRCTPHCQFAPYFRSDEPKKFANVHKVFGASNVSKILNEVPEDQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQRKMVELQHDLMLART 109 6********************************************************************************************999876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence |
MKSNEPRSSS SCAACKFLKR RCTPHCQFAP YFRSDEPKKF ANVHKVFGAS NVSKILNEVP 60 EDQREDTVNS LVYEAEVRLR DPVYGCIGAI ASLQRKMVEL QHDLMLARTR LAYFAAKQNS 120 TTNCSLMLDY DPFNVANMMP SDFADVPVTA GYLDSYVQNS FDMDHCASTN EFGQFPFP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 2e-64 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT39400 |