PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT39365 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 75aa MW: 8644.2 Da PI: 11.6818 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.2 | 2.2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri +k rqvtfskRr+g+lKKA+ELS+LCda+vav++fs++g+ly++ss OIT39365 9 KRIGDKNSRQVTFSKRRKGLLKKAKELSILCDADVAVVVFSNRGRLYDFSS 59 799**********************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence |
MGRKKVEIKR IGDKNSRQVT FSKRRKGLLK KAKELSILCD ADVAVVVFSN RGRLYDFSST 60 NRFLIKSLHI VRSSF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-27 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT39365 |