PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT39313

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRF

Protein Properties

Length: 349aa MW: 39054.4 Da PI: 7.755

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT39313	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.4	2.9e-24	78	122	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH++rgr+rsrk++e+ OIT39313 78 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMNRGRNRSRKHVES 122 79****************************************986 PP
2	QLQ	64.7	2.3e-22	17	52	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa Q+q+L++Q+++yKyL+a+ PvPp+L+++i++ OIT39313 17 PFTAVQWQELEHQAMIYKYLVAGIPVPPDLVLPIRR 52 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MSGTTTRTVA EDGYRPPFTA VQWQELEHQA MIYKYLVAGI PVPPDLVLPI RRSFEAISAR 60 FFHHTSLGYC SYYGKKFDPE PGRCRRTDGK KWRCSKDAYP DSKYCERHMN RGRNRSRKHV 120 ESQSTSQSVL TSMSNNATGS SKTSGNFQSS SSGSLQNMPL YSAAYSEGLN YGSTGTKMQM 180 EPVSYGIDNK AYRYFHGMAA DADEQNFSLE AAASMRSLGM GSNADSTWCL TPQLSSNPMV 240 KPKNETQLLY GSPQTRLPHP FEPMIDATIS KQQQHCFFDS DIGSPGTVKQ EERSMRPFFD 300 EWPTAKESWS NLDDEGCNKN NFSSTQLSIS IPMAPSDFFS RSSCSPNDV

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MSGTTTRTVA EDGYRPPFTA VQWQELEHQA MIYKYLVAGI PVPPDLVLPI RRSFEAISAR  60
FFHHTSLGYC SYYGKKFDPE PGRCRRTDGK KWRCSKDAYP DSKYCERHMN RGRNRSRKHV  120
ESQSTSQSVL TSMSNNATGS SKTSGNFQSS SSGSLQNMPL YSAAYSEGLN YGSTGTKMQM  180
EPVSYGIDNK AYRYFHGMAA DADEQNFSLE AAASMRSLGM GSNADSTWCL TPQLSSNPMV  240
KPKNETQLLY GSPQTRLPHP FEPMIDATIS KQQQHCFFDS DIGSPGTVKQ EERSMRPFFD  300
EWPTAKESWS NLDDEGCNKN NFSSTQLSIS IPMAPSDFFS RSSCSPNDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	3e-51	GRF family protein

Link Out ? help Back to Top
Ensembl	OIT39313