PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT39304 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 22400.2 Da PI: 4.5919 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.3 | 5.2e-38 | 8 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +C aCk+lrr+C+++C++apyf+ eq +++fa+vhk+FGasnv+kll +lp++ r++a+ ++ yeA ar++dP+yG+vg+i++l+qq+++l +e++ ++ OIT39304 8 SCGACKFLRRRCSNECIFAPYFCYEQaTNHFAAVHKVFGASNVSKLLLHLPQHCRSEAAVTMSYEALARMQDPIYGCVGHIFALEQQVASLVEEIEIFANQ 108 6***********************9978****************************************************************999987765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence |
MAGPAGSSCG ACKFLRRRCS NECIFAPYFC YEQATNHFAA VHKVFGASNV SKLLLHLPQH 60 CRSEAAVTMS YEALARMQDP IYGCVGHIFA LEQQVASLVE EIEIFANQMA FYAGEVPMEN 120 TIDTLRFSLE CNNMNVGNNH ANHSITSLAH VNDTSANEAF ITQMNAELPE INGFDNLFSS 180 TFFDFDISDR VIEGPDLICP SNP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 3e-56 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT39304 |