PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT39215

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 172aa MW: 18777.2 Da PI: 7.8304

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT39215	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.8	1.2e-45	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++l+e++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq+++l+++la +++e OIT39215 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELSEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDHLQTQLAIAQAE 112 7**********************************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence
MKESGRKQSA ASPCAACKLL RRRCAQDCVF APYFPADEPQ KFASVHKVFG ASNVNKMLQE 60 LSEHQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID HLQTQLAIAQ AEVVHMRMRQ 120 FSSMSSGGGT AGNSPENVSP SSRHTQTQPT MSLFTMDMVV DQANMGESLW SC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-79	LBD family protein

Link Out ? help Back to Top
Ensembl	OIT39215