PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT39133
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 851aa    MW: 95241.9 Da    PI: 6.3043
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT39133genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.45.5e-23127228199
               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
               f+k+lt sd++++g +++p++ ae+       ++ +++ ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+++
  OIT39133 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSQTPPC-QELIARDLHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLLG 224
               99*****************************7555555.59************************************************..8899999*** PP

               EE-S CS
        B3  96 vfrk 99 
               ++r+
  OIT39133 225 IRRA 228
               *997 PP
2Auxin_resp115.93.6e-38253336183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+v++nPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrW nS+Wrs+k
    OIT39133 253 AAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWANSHWRSVK 336
                 79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    
MKLSTSGLSQ QPHEGEKKCL NSELWHACAG PLVCLPTVGS RVVYFPQGHS EQVAATTNKE  60
VDAHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT YLPVELGIPS  120
RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ TPPCQELIAR DLHDIEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPSEFVIPL SKYIKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIG DLDPVRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSLFP LRLKRPWYPG TSSFQENNSD AINGMTWLRG EGGDQGPHLM NLQSFGMLPW  420
MQQRVDPTIL RNDLNQQYQA MLATGLQNFG SSDMLKQQLM QFQQPVQYLQ HAGSHNPLLQ  480
QQQQQQQQAM QQQQQQQQQQ AIHQHMLPAQ TQMDNVQRQQ QQQVGNQMDD QAHQHSYQEA  540
YQISRSQLQQ KQPSNIPSQS FSKPDFADPN SKFAASIAPS VIPTGLGSLC SEGSSNFLNF  600
NSIGQQSVIM EQPPQKSWMS KFGHSELNAG SNSSSLPAYG KDTSTSQETC SLDAQNQNLF  660
GANVDSSGLL LPTTVSNVST ASIDADMSAM PLGTSGFQNS LYGYVQDSSD LLHNAGQVDP  720
LNATRTFVKV YKSGSVGRSL DITRFNSYHE LRQELGQMFG IEGFLEDPQR SGWQLVFVDR  780
ENDVLLLGDD PWEAFVNNVW YIKILSPEDV QKLGKEEVES LNRGSLERMN SNSADGRDFM  840
SGLPSIGSLE Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein