PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT39078
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 294aa    MW: 32325.5 Da    PI: 9.1789
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT39078genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-143377147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
         OIT39078 33 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 77
                     789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MNSNSPSMAN NNSTPTDSSG KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED  60
FVGSKTVIQI RSHAQKYFLK VQKNGTTAHV PPPRPKRKAA HPYPQKAPKN VLVPLQASMG  120
YPSSMNSLPP GYPSWDDTSV LLNSPSGGAM PSQDEYHLQR IQADIGSKGA TLISDSSISG  180
IRSSSRTAPS SELPEQSKLG SVPHGIPDFA EVYSFIGSVF DPDTKGHVQK LKEMDPINFE  240
TVLLLMRNLT MNLSNPDFEP IKNVLSTYDL STKVVGLPAG GAVKNHTDLS CQTI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-107MYB_related family protein