PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT39031

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HSF

Protein Properties

Length: 321aa MW: 37609.4 Da PI: 4.5987

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT39031	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.5	3.4e-36	11	103	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k ye+++de++++lisw+++ n+f+++d +f++++LpkyFkhsnf+SFvRQLn+YgF+k+++++ weF+++sF kg+k+ll++i OIT39031 11 FLLKCYEMVDDESTDSLISWHQSDNNFIIWDVPKFSSQLLPKYFKHSNFSSFVRQLNIYGFHKTDTDR---------WEFANDSFLKGQKHLLKNIV 98 9******************999************************************9999.........****************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ OIT39031 99 RRKQS 103 *9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MVKSFENVAP FLLKCYEMVD DESTDSLISW HQSDNNFIIW DVPKFSSQLL PKYFKHSNFS 60 SFVRQLNIYG FHKTDTDRWE FANDSFLKGQ KHLLKNIVRR KQSSVVQKKS SQHEEIKSSK 120 SEENKNLELW EEVENLKTDK NVLTQELVKL RQHQQNSESK LILLREQLKG MEKHQQQMLS 180 FIVMAMQSPN FLVQFFQPKE NNWRVTENGN NILSEVEDYS EDMPPDRAIV RYHPPTHEAA 240 EPLCAELETA VDTKKPMELD LSCDEIKDLF SNIDFFSGLM DEKLLSFENS VPLTLPDLPD 300 DEDMLEQLLL SQPITENKED E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67970.1	5e-77	HSF family protein

Link Out ? help Back to Top
Ensembl	OIT39031