PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT38959
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 233aa    MW: 26001.1 Da    PI: 5.7543
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT38959genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.7e-174393155
       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              + y+GVr +  + +Wv+e+r+ps+   +kr++lg++ tae+Aa+a++ a+++l+g
  OIT38959 43 PVYRGVRKRN-NDKWVCELREPST---QKRIWLGSYPTAEMAARAHDIAALALRG 93
              68*****888.8*********965...4*************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MNNSSSSSHV RVAVSDEEDI NILALRKPKK RAGRKKFKET RHPVYRGVRK RNNDKWVCEL  60
REPSTQKRIW LGSYPTAEMA ARAHDIAALA LRGPLATLNF ADSAWRLPVP VSKDPKDLRH  120
AAAKAAEPFW SGEETDVNSR VAANTGNGSE EMKAAAEEDN AVYNCMQNTV IAENVLYSNY  180
SCSEVGMVGT QEWLANMEER SLFSPNPCLL GSCFSWDDDV ESDVEVSLWS YSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.14e-36ERF family protein