PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OIT38703 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 251aa MW: 28471 Da PI: 5.4792 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.3 | 3e-21 | 105 | 155 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +grW+AeIrdp+ r kr++lg+++t+eeAa +++a+ kl+g OIT38703 105 KKFRGVRQRP-WGRWAAEIRDPT----RgKRVWLGTYDTPEEAATVYDEAAVKLKG 155 59********.**********84....35************************998 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence |
MIRNPVISPM DVPKTVKFSQ HIVTKNKHVP EQNEKPNFHS KFSQRVVRII LTDADATDSS 60 DDEGQDTVRR VKRHVTEINL MPSPNLICGK KRRLVSPDTD VTRRKKFRGV RQRPWGRWAA 120 EIRDPTRGKR VWLGTYDTPE EAATVYDEAA VKLKGPDAVT NFPKVIMADT TETGSVTDGG 180 EKSENDIALS PTSVLRNGFF TPFDDLGFCE VDAFGFDVDS LFRLPEFGMS EKYYGEEFGE 240 FDFDDFALEA R |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 90 | 106 | KKRRLVSPDTDVTRRKK |
2 | 91 | 107 | KKRRLVSPDTDVTRRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-32 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OIT38703 |