PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT38480
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 694aa    MW: 75820.4 Da    PI: 6.3504
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT38480genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like911e-28200253155
   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
               kpr++W+ eLH++Fv av+qL G ekA+Pk+il++m+v+gLt+e+v+SHLQkYRl
  OIT38480 200 KPRVVWSIELHRKFVAAVNQL-GLEKAVPKRILDMMNVDGLTRENVASHLQKYRL 253
               79*******************.********************************8 PP
2Myb_DNA-binding383.9e-12202252148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e++ ++v av+qlG +   +k+I  +m+  g+t++++ s++qky+
         OIT38480 202 RVVWSIELHRKFVAAVNQLGLEkaVPKRILDMMNvDGLTRENVASHLQKYR 252
                      678***********************************************7 PP
3Response_reg78.81.8e-26181261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ ++ll  +l+k +y +v+++++++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a++++ ++ + +  Ga 
      OIT38480  18 VLAVDDDPICLKLLDGLLRKCQY-HVTTTSQARTALKMLRENRdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDSRLVMKGITHGAC 112
                   799********************.***************999889*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp+  eel +
      OIT38480 113 DYLVKPVRLEELKN 126
                   ***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    
MTVEERENYD NFPIGMRVLA VDDDPICLKL LDGLLRKCQY HVTTTSQART ALKMLRENRD  60
RFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSANSDS RLVMKGITHG ACDYLVKPVR  120
LEELKNIWQH VIRKKKVEPK NHIKSDDQDK ANQGGGEGGR GPQLSGNADQ NGKLNKKRKD  180
EEYESDENGN DDDDPTTQKK PRVVWSIELH RKFVAAVNQL GLEKAVPKRI LDMMNVDGLT  240
RENVASHLQK YRLYLKRISS EATQQANMVA ALGGKDSAYM RMGSLDGLGG FRTLAGSGRY  300
GQASLSSSYA SGGMLGRLNS PAGVSLRSLA SSQLLQPNHG QSLSNSMNSF TKLNPNVPPV  360
SQNASLFHGI PASLELDQLQ QSKHAIHMGE LNPLDEHGLL TAASSTFTDS RSFVGNSNSS  420
LSNVLNNPIL LQVNSQQPLT GGGFGNQPSL NVASFSSDAF NTGVSGSSNF LDHSRYTENG  480
QNSIQPVKFQ SSSFPSTEPF SKSHLPQDRV RENSTSAGPH LQNDTVDFSS STIVSLPFEA  540
SRGETQCLES LGGGVQIMNQ AHCQRWPDQN QHYSQNSNHI FGNMSSQVSS NGGVVSLPHS  600
MDQNNEVVYR GVDVSLIGRS NGGSSALIQH SPDSRTRTNE DYLLETTKQQ VSFLPQGYGS  660
LDDLMSAMKR EQQDGAMLDG GEFGFDAYSF GSGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-124ARR-B family protein