PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT38382 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 161aa MW: 18016.3 Da PI: 5.601 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.4 | 9.3e-14 | 18 | 64 | 4 | 50 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 e+ + f+k ++ i+K A+ELS+ ++aev ++ifs++gk y+y OIT38382 18 ESMVEHLTAFAKTKAVIFKRAHELSITTGAEVGLLIFSPSGKPYTYG 64 666677899************************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence |
MAKNKSLSRQ KAEIKALESM VEHLTAFAKT KAVIFKRAHE LSITTGAEVG LLIFSPSGKP 60 YTYGSPHNFN AIADRFLKQK LYDSENHYSD VVESNSNKEF ERLMIQKEKL EKLLDIIQEI 120 QNRSTTGNSI ALHPSSSEEH CVMNDLTVVG DLDDEETSAA D |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 4e-17 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT38382 |